Publications - New York Genome Center

Prostate Cancer Prostatic Dis 7, 63-72 · January 30, 2015

Effective antigen cross-presentation by prostate cancer patients’ dendritic cells: implications for prostate cancer immunotherapy.

Orange, D. E., Jegathesan, M., Blachere, N. E., Frank, M. O., Scher, H. I., Albert, M. L. & Darnell, R. B.

Nature 456, 464-469 · January 30, 2015

HITS-CLIP yields genome-wide insights into brain alternative RNA processing.

Licatalosi, D. D., Mele, A., Fak, J. J., Ule, J., Kayikci, M., Chi, S. W., Clark, T. A., Schweitzer, A. C., Blume, J. E., Wang, X., Darnell, J. C. & Darnell, R. B.

Nature 460, 479-486. PMC2733940 · January 30, 2015

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.

Chi, S. W., Zang, J. B., Mele, A. & Darnell, R. B.

PLoS One 5. PMC2931687 · January 30, 2015

Harnessing naturally occurring tumor immunity: a clinical vaccine trial in prostate cancer.

Frank, M. O., Kaufman, J., Tian, S., Suarez-Farinas, M., Parveen, S., Blachere, N. E., Morris, M. J., Slovin, S., Scher, H. I., Albert, M. L. & Darnell, R. B.

Wiley Interdiscip Rev RNA 1, 266-286 · January 30, 2015

HITS-CLIP: panoramic views of protein-RNA regulation in living cells.

Darnell, R. B.

Neuron 66, 848-858 · January 30, 2015

Nova2 regulates neuronal migration through an RNA switch in disabled-1 signaling.

Yano, M., Hayakawa-Yano, Y., Mele, A. & Darnell, R. B.

Front Neural Circuits 4, 5. PMC2856630 · January 30, 2015

The neuronal splicing factor Nova co-localizes with target RNAs in the dendrite.

Racca, C., Gardiol, A., Eom, T., Ule, J., Triller, A. & Darnell, R. B.

Cell 146, 247-261 · January 30, 2015

FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism.

Darnell, J. C., Van Driesche, S. J., Zhang, C., Hung, K. Y., Mele, A., Fraser, C. E., Stone, E. F., Chen, C., Fak, J. J., Chi, S. W., Licatalosi, D. D., Richter, J. D. & Darnell, R. B.

Genes Dev 26, 1626-1642. PMC3404389 · January 30, 2015

Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain.

Licatalosi, D. D., Yano, M., Fak, J. J., Mele, A., Grabinski, S. E., Zhang, C. & Darnell, R. B.

Neuron 75, 1067-1080 · January 30, 2015

Neuronal Elav-like (Hu) Proteins Regulate RNA Splicing and Abundance to Control Glutamate Levels and Neuronal Excitability.

Ince-Dunn, G., Okano, H. J., Jensen, K. B., Park, W. Y., Zhong, R., Ule, J., Mele, A., Fak, J. J., Yang, C., Zhang, C., Yoo, J., Herre, M., Okano, H., Noebels, J. L. & Darnell, R. B.

Cold Spring Harbor Laboratory Press · January 30, 2015

Mapping of in vivo RNA binding sites by UV-crosslinking immuopreciptiation (CLIP).

Green, M. & Sambrook, J. (eds)

Nat Struct Mol Biol 19, 321-327 · January 30, 2015

An alternative mode of microRNA target recognition.

Chi, S. W., Hannon, G. J. & Darnell, R. B.

Neuron 75, 437-450. PMC3418517 · January 30, 2015

Muscleblind-like 2-Mediated Alternative Splicing in the Developing Brain and Dysregulation in Myotonic Dystrophy.

Charizanis, K., Lee, K. Y., Batra, R., Goodwin, M., Zhang, C., Yuan, Y., Shiue, L., Cline, M., Scotti, M. M., Xia, G., Kumar, A., Ashizawa, T., Clark, H. B., Kimura, T., Takahashi, M. P., Fujimura, H., Jinnai, K., Yoshikawa, H., Gomes-Pereira, M., Gourdon, G., Sakai, N., Nishino, S., Foster, T. C., Ares, M. J., Darnell, R. B. & Swanson, M. S.

Elife 2, e00105. PMC3564474 · January 30, 2015

Dendritic cells loaded with FK506 kill T cells in an antigen-specific manner and prevent autoimmunity in vivo.

Orange, D. E., Blachere, N. E., Fak, J., Parveen, S., Frank, M. O., Herre, M., Tian, S., Monette, S. & Darnell, R. B.

eLIFE 2 · January 30, 2015

NOVA-dependent regulation of cryptic NMD exons controls synaptic protein levels after seizure.

Eom, T., Zhang, C., Wang, H., Lay, K., Fak, J., Noebels, J. L. & Darnell, R. B.

Annu Rev Neurosci, Vol 36 · January 30, 2015

RNA Protein Interaction in Neurons.

Darnell, R. B.

Nat Protoc · January 30, 2015

Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis.

Moore, M. J., Zhang, C., Gantman, E. C., Mele, A., Darnell, J. C. & Darnell, R. B.

Elife. · June 4, 2014

Loss of the multifunctional RNA-binding protein RBM47 as a source of selectable metastatic traits in breast cancer.

Vanharanta S, Marney CB, Shu W, Valiente M, Zou Y, Mele A, Darnell RB, Massagué J.

Genome Biology · January 20, 2015

Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies

Panousis N, Gutierrez-Arcelus M, Dermitzakis ET, Lappalainen T.

Lappalainen Lab

Genomics Data · January 20, 2015

Genome Wide Mapping of Foxo1 Binding-sites in Murine T Lymphocytes

Liao W, Ouyang W, Zhang MQ, Li MO.

Phatnani Lab

Computational Biology Lab

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